[Bioclusters] Iprscan Installation problem

[hajar sadr]

Dear All

I have problem when I installing iprscan on our cluster. It is a LSF cluster
system and I have access to it as a user not an administrator. I already
copied all required files as well as licenses which software needs to
work.The problem is that during running I get following error:

SUBMITTED iprscan-20090415-14523617
/iprscan/bin/iprscan:
/iprscan/tmp/20090415/iprscan-20090415-14523617/merged.raw unavailable : No
such file or directory
submitJobs: submission failed: failed to execute lsf42 submit:
/iprscan/tmp/20090415/iprscan-20090415-14523617/chunk_1/iprscan-20090415-14523617-blastprodom-cnk1.dsub
exited with status 65280<br>Bad resource requirement syntax. Job not
submitted.<br><br><br>To help us solve the problem, please copy and paste
this error<br>and email it to the administrator <a href="mailto:?subject=Error
in InterProScan job iprscan-20090415-14523617"></a>.<br><br>Sorry about the
inconvenience and thank you for using InterProScan.<br><br>

I noticed that iproscan made some directory and files such as "chunk_1" and
"iprscan-20090415-14523617.dcmd" and so on, but I dont know what the problem
is with making "merged.raw" and then finding it.Can any body help me in this
regard


Thank you so much,
Hajar

[Tim Cutts]

Post by hajar sadr
Dear All
I have problem when I installing iprscan on our cluster. It is a LSF cluster
system and I have access to it as a user not an administrator. I already
copied all required files as well as licenses which software needs to
SUBMITTED iprscan-20090415-14523617
/iprscan/tmp/20090415/iprscan-20090415-14523617/merged.raw
unavailable : No
such file or directory
/iprscan/tmp/20090415/iprscan-20090415-14523617/chunk_1/
iprscan-20090415-14523617-blastprodom-cnk1.dsub
exited with status 65280<br>Bad resource requirement syntax. Job not
submitted.<br><br><br>To help us solve the problem, please copy and paste
this error<br>and email it to the administrator <a href="mailto:?subject=Error
in InterProScan job iprscan-20090415-14523617"></a>.<br><br>Sorry about the
inconvenience and thank you for using InterProScan.<br><br>
I noticed that iproscan made some directory and files such as
"chunk_1" and
"iprscan-20090415-14523617.dcmd" and so on, but I dont know what the problem
is with making "merged.raw" and then finding it.Can any body help me in this
regard

Use bjobs -l or bhist -l to find out exactly what resource requirement
the jobs were requesting, and then take that information to your local
LSF administrator, who should be able to show you what's wrong with
it. There's probably an iprscan configuration file you can then tweak
to change the resource requirement string to suit your local cluster.

Regards,

Tim